Plex deleted files after "Scan Library Files"
For some reason plex deleted two movies and tv shows after clicking on "Scan Library Files". This is what I did; I used plex to optimize my movie and tv shows from MKV to MP4. Then I moved the optimized versions (MP4) over to the parent folder and deleted the original (MKV) files. Then I went to plex and "Scan Library Files" and that is when they started to be deleted. I checked my server setting library and the Allow media deletion was checked (I never checked this box, seems to be on by default.)
My questions are:
1. Is this feature a special deletion feature that should be fixed, why does the "Scan Library Files" delete files?
2. Is there a way to recover my lost movies and TV shows?
3. Was there a post about this before, I couldn't find it?
Freenas 9.10 using plex pluggin version 188.8.131.5285
Any suggestions would be awesome.