I kinda doubt that bitrates affect anything, unless the stereo track has an unusually high bitrate that is higher than the surround track. Truth is, I have a couple of formulas for bitrate for audio and video… movies I care about get the higher bitrates, others don’t. I use Plex primarily for convenience, and streaming to friends and family, so there is no original, untouched content. If someone doesn’t like the quality, “buy the disc yourself,” is my official stance
Generally I use AAC for the stereo track at 160, but if I decide on AC3, I use 192. I think that’s what Dolby recommended years ago, and until blurays came along, that was about the best you got on a DVD. I use AAC for the stereo track because almost every player (if not all) play stereo AAC without any transcoding.
The surround track is usually 384, but I do have stuff at 448 (from DVD’s) and 640 (from Blurays) To be honest, the 64 year old ears I’m using probably can’t tell the difference as well as they could a few years ago, so I hardly ever include the original DTS track (usually 1510 I think). If I want the real 7.1 sound my system will output, I throw in the BluRay and get the bonus of better video that even my eyes can see.
@GoRichard said:
When There Are 2 Options, I’ve Never Ever Had To Select The Audio It Has Always Selected The Correct Audio. I Used To Use 3 Options With BluRays [AC3 2.0 5.1 DTS] But That Was Hit Or Miss.
If you want to have both an AC3 track and DTS track, I would try adding the DTS track as the second track. That is, the audio tracks should be Stereo (AAC or AC3) as audio track one, DTS as audio track 2, and AC3 as the third track. My little experiment to reproduce your problem seems to imply the Roku stops looking after it finds the first surround audio. I think your original post showed the surround AC3 track before the DTS track. I would think one stereo and one surround track is enough, you’ll probably never use that third audio option anyway (unless it’s a different language). 
Most of the apps seem to stop looking after they find a track in the right language. I often see responses here that you MUST select the correct audio for your system. The Roku may be the only one that actually looks for a second (better) choice, even if it won’t look for the even better third choice.