Lost libraries after update

Server Version#:1.18.2.2058-e67a4e892-x86_64.
Player Version#:4.8.4

So I installed an update to my DS 1517+ and lost all connection to my libraries. I tried deleting everything and starting again but the Plex server is still saying there is nothing in the directory I’m pointing it at.
Any help would be appreciated.
Tim

Could this be related to the announcement below?

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