Video jumping a few seconds

I do not have the same cpu as the creator.  I am running a Pentium 4 proc with this machine.  It works flawlessly and is just what I have.  I will repost this error, but I have solved my issue by reinstalling inside a chroot.  I may have had some conflicting debian packages for all I know.  I also created a new library.  I am thinking I will revert to the old library with the new install and see if the issue comes back.  I tried seeing if I could duplicate the issue elsewhere but the trouble was I couldn't simulate the same transcoding.  PMS is only transcoding the audio from DTS to ac3 and remuxing into a .ts file for the ATV.  I could force transcoding for my laptop but this was doing the video, which my CPU is very incapable of.

Thanks for the reply.