Separate from the CLI tool Abort issue - what type media Library & what agent? The Plex Movie scanner/agent doesn’t typically need these “Plex Dance” / hokey-pokey workarounds.
Running a Scan from the Web UI or the command line should find the same files. I haven’t had different results from one vs. the other.
I’m curious - if you look at your Library and filter for Duplicates, perhaps some of the media has been incorrectly matched and is stacked with other shows.
It might also be helpful to share your current file naming and directory structure.
