Thanks for the log files.
There is no need to clear the log files. Doing so prevents seeing what was happening before the last restart, which can sometimes help troubleshooting. For example, were PMS to crash, clearing the log files before restarting deletes the files that might contain the reason for the crash.
Plex rotates the log files when launched. Look for BPQ: [Idle] -> [Starting] at the top of Plex Media Server.log and rollovers, .1 to .5. That shows when Plex was launched.
Is Scan my library automatically still enabled? If not, please re-enable it. It adds the DEBUG - [Notify] Now watching... entries in Plex Media Server.log. This shows which media directories Plex scans when launched, which can aid in troubleshooting.
Regarding the cartoon files:
Plex Media Server cannot see files in /milk/shows-cartoons. There are either permission problems or the files are not available (moved, unmounted, etc.).
Check that the directories are correctly mounted and that Plex has at least read-only permission to the media files.
The Plex Linux Tips has several entries that may help with mounting drives/shares and setting permissions.
From Plex Media Server.log. Notice the “marking media not available” entry.
Oct 17, 2024 20:38:25.369 [140497338256184] DEBUG - Activity: updated activity 0ca382cd-1cc3-4d8f-aebb-e092179800f4 - completed 0.0% - Scanning Shows - Cartoon
Oct 17, 2024 20:38:25.391 [140497338256184] DEBUG - Scanning Shows - Cartoon using en-US(Plex TV Series) with 5445 current media items and 1 section locations in the database.
Oct 17, 2024 20:38:25.391 [140497338256184] DEBUG - * Scanning /milk/shows-cartoons
Oct 17, 2024 20:38:25.391 [140497338256184] DEBUG - * Marking media not available in /milk/shows-cartoons
Oct 17, 2024 20:38:25.691 [140497338256184] DEBUG - Activity: updated activity 0ca382cd-1cc3-4d8f-aebb-e092179800f4 - completed 99.0% - Scanning Shows - Cartoon
Oct 17, 2024 20:38:25.722 [140497338256184] DEBUG - Activity: updated activity 0ca382cd-1cc3-4d8f-aebb-e092179800f4 - completed 100.0% - Scanning Shows - Cartoon
From Plex Media Scanner Analysis.log. Notice the ERROR “could not parse … no such file” entry.
Oct 17, 2024 20:38:27.215 [140230766546688] DEBUG - Analyzing media parts for item 14543 (Episode 1): 14555
Oct 17, 2024 20:38:27.215 [140230766546688] DEBUG - [ID 22779] Media part analysis: /milk/shows-cartoons/Futurama [1999] {tmdb-615}/Season 10/Futurama - S10E01.mp4
Oct 17, 2024 20:38:27.228 [140230766546688] DEBUG - [MI] Opening input file: "/milk/shows-cartoons/Futurama [1999] {tmdb-615}/Season 10/Futurama - S10E01.mp4"
Oct 17, 2024 20:38:27.228 [140230766546688] DEBUG - [FFMPEG] - Opening '/milk/shows-cartoons/Futurama [1999] {tmdb-615}/Season 10/Futurama - S10E01.mp4' for reading
Oct 17, 2024 20:38:27.228 [140230766546688] DEBUG - [FFMPEG] - Setting default whitelist 'file,crypto,data'
Oct 17, 2024 20:38:27.228 [140230766546688] ERROR - Exception analyzing media file '/milk/shows-cartoons/Futurama [1999] {tmdb-615}/Season 10/Futurama - S10E01.mp4' (Could not parse /milk/shows-cartoons/Futurama [1999] {tmdb-615}/Season 10/Futurama - S10E01.mp4 (error=-2): No such file or directory)
Oct 17, 2024 20:38:27.228 [140230766546688] ERROR - Failed to successfully analyze part 22779.