It seems that files–especially duplicates, that are already recognized/matched/analyzed are being analyzed again during a library scan, which is seemingly slowing down the scanning process.
These appear with the words, didn't exist, can't skip
which is rather ambiguous because these already exist in Plex.
~ $ tail -f /var/lib/plexmediaserver/Library/Application\ Support/Plex\ Media\ Server/Logs/Plex\ Media\ Server.log|grep "didn't exist"
Mar 07, 2021 18:41:29.655 [0xffff68ff9190] DEBUG - File '/drive/Movies/The Dark Knight (2008)/The.Dark.Knight.2008.REMUX.1080p.BluRay.TrueHD.5.1.VC-1-LEGi0N.mkv' didn't exist, can't skip.
Mar 07, 2021 18:41:29.678 [0xffff68ff9190] DEBUG - File '/drive/Movies/Iron Man 3 (2013)/Iron.Man.3.2013.BluRay.1080p.DTS-HD.MA.7.1.AVC.REMUX-FraMeSToR.mkv' didn't exist, can't skip.
Mar 07, 2021 18:41:30.258 [0xffff68ff9190] DEBUG - File '/drive/Movies/Casino Royale (2006)/Casino.Royale.2006.REMUX.1080p.Blu-ray.AVC.DTS-HD.MA.5.1-LEGi0N.mkv' didn't exist, can't skip.
Mar 07, 2021 18:41:30.654 [0xffff68ff9190] DEBUG - File '/drive/Movies/The Terminal (2004)/The Terminal 2004 BluRay REMUX 1080p AVC DTS-HD MA5.1 2Audio-CHD.mkv' didn't exist, can't skip.
Mar 07, 2021 18:41:31.112 [0xffff68ff9190] DEBUG - File '/drive/Movies/The Dark Knight Rises (2012)/The Dark Night Rises 2012 BluRay REMUX 1080p AVC DTS-HD MA 5.1-LEGi0N.mkv' didn't exist, can't skip.
...
Which corresponds to FFMPEG processes:
~ $ tail -f /var/lib/plexmediaserver/Library/Application\ Support/Plex\ Media\ Server/Logs/Plex\ Media\ Server.log|grep "FFMPEG"
Mar 07, 2021 18:41:29.687 [0xffff7a7fc190] DEBUG - [JobRunner] Job running: FFMPEG_EXTERNAL_LIBS='/var/lib/plexmediaserver/Library/Application\ Support/Plex\ Media\ Server/Codecs/367b3d4-3673-linux-aarch64/' X_PLEX_TOKEN=xxxxxxxxxxxxxxxxxxxxo' '/usr/lib/plexmediaserver/Plex Media Scanner' '--match' '--type' '1' '--log-file-suffix' ' Matcher' '--files' '/drive/Movies 2/The Dark Knight (2008)/The.Dark.Knight.2008.1080p.BluRay.x264.DTS-HD.MA.5.1-SWTYBLZ.mkv'
Mar 07, 2021 18:41:30.247 [0xffff7a7fc190] DEBUG - [JobRunner] Job running: FFMPEG_EXTERNAL_LIBS='/var/lib/plexmediaserver/Library/Application\ Support/Plex\ Media\ Server/Codecs/367b3d4-3673-linux-aarch64/' X_PLEX_TOKEN=xxxxxxxxxxxxxxxxxxxxo' '/usr/lib/plexmediaserver/Plex Media Scanner' '--match' '--type' '1' '--log-file-suffix' ' Matcher' '--files' '/drive/Movies 2/Iron Man 3 (2013)/Iron.Man.3.2013.REMASTERED.1080p.BluRay.x264.DTS-SWTYBLZ.mkv'
Mar 07, 2021 18:41:30.642 [0xffff6b7fe190] DEBUG - [JobRunner] Job running: FFMPEG_EXTERNAL_LIBS='/var/lib/plexmediaserver/Library/Application\ Support/Plex\ Media\ Server/Codecs/367b3d4-3673-linux-aarch64/' X_PLEX_TOKEN=xxxxxxxxxxxxxxxxxxxxo' '/usr/lib/plexmediaserver/Plex Media Scanner' '--match' '--type' '1' '--log-file-suffix' ' Matcher' '--files' '/drive/Movies 2/Casino Royale (2006)/Casino.Royale.2006.REMASTERED.1080p.BluRay.x264.DTS-HD.MA.5.1-SWTYBLZ.mkv'
Mar 07, 2021 18:41:31.101 [0xffff7a7fc190] DEBUG - [JobRunner] Job running: FFMPEG_EXTERNAL_LIBS='/var/lib/plexmediaserver/Library/Application\ Support/Plex\ Media\ Server/Codecs/367b3d4-3673-linux-aarch64/' X_PLEX_TOKEN=xxxxxxxxxxxxxxxxxxxxo' '/usr/lib/plexmediaserver/Plex Media Scanner' '--match' '--type' '1' '--log-file-suffix' ' Matcher' '--files' '/drive/Movies 2/The Terminal (2004)/The.Terminal.2004.1080p.BluRay.X264-AMIABLE.mkv'
Mar 07, 2021 18:41:31.501 [0xffff797fa190] DEBUG - [JobRunner] Job running: FFMPEG_EXTERNAL_LIBS='/var/lib/plexmediaserver/Library/Application\ Support/Plex\ Media\ Server/Codecs/367b3d4-3673-linux-aarch64/' X_PLEX_TOKEN=xxxxxxxxxxxxxxxxxxxxo' '/usr/lib/plexmediaserver/Plex Media Scanner' '--match' '--type' '1' '--log-file-suffix' ' Matcher' '--files' '/drive/Movies 2/The Dark Knight Rises (2012)/The.Dark.Knight.Rises.2012.1080p.BluRay.x264.DTS-FGT.mkv'
...