Duplicates

After making that change and rescanning your library, did the shows separate? If not, the Plex Dance might be helpful. Outside of that, using something like FileBot or Sonarr to bulk rename your files to better follow Plex’s TV/ShowName (Year)/Season XX/Show Name (Year) - SXXEYY - optional_info.ext conventions will probably be the easiest way to get things working as expected.