The Plex Dance should still work. Move the files out of the folder the library is directed at, scan the library, empty trash, clean bundles, move files back, scan again, and boom. It should work. Plex dancing fixes like 95% of metadata issues. It should also prevent any of the issues you mentioned unless you have really specific tag based sharing or something. The library and its overarching settings will remain, but the content and it metadata will be forced to refresh because Plex will think that you have deleted it but left the library intact.
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