Not Showing All Content in Server Library or Client Library

I have recently build a 10TB UNRAID server.
Specs: Core i3 2100 , 8GB Ram DDR3, 10TB HDD and 120GB SSD Cache
I have 128 Different TV Shows and 850 movies
The movies are syncing fine.
Im having problems with the TV Shows. Not all of the episodes are syncing properly from the UNRAID Server to the Plex Server. The Plex Server is installed on the UNRAID server through a built in container inside Docker.
For Example: I have every single Top Gear UK Season and Episode all in separate folders and all renamed Episode 1, Episode 2, Episode 3, Episode 4 and so on and so forth. However inside the Plex server not all of the seasons are showing up. I havent a clue what is wrong. All the filenames are properly done and folders are sorted properly (spent 7 hours doing this). This problem is not only for Top Gear… There are various other Series which im having trouble with, for example Blindspot I physically have all Season 1 and 7 episodes of Season 2 yet on the Plex server its only giving me 3 Episodes of Season 1.
I am a Plex Pass Subscription paid user so i have the full premium account.
I am looking forward to some help with this as I am really liking the layout and features of Plex. I have already forgotten about Kodi… :slight_smile:
Many Thanks
Jon

@ingliz83 said:
For Example: I have every single Top Gear UK Season and Episode all in separate folders and all renamed Episode 1, Episode 2, Episode 3, Episode 4 and so on and so forth.

That is the problem right there.
https://support.plex.tv/hc/en-us/articles/200220687-Naming-Series-Season-Based-TV-Shows

More Info:
https://support.plex.tv/hc/en-us/articles/201543057-Why-is-some-of-my-content-not-found-

Taking the ‘sting’ out of mass-renaming files: Filebot

Thanks for the Swift reply i am using FileBot as we speak