A few TV Show episodes are not showing up? Help please!

It does seem a bit odd.

Enable Debug Logging: Settings/General
Prepare to download logs and post them when asked: Settings/Troubleshooting

Do this so we can generate some fresh ‘Debug’ logs:

Plex Dance The Show (only one season so let’s start over), half the season at a time and see what happens (your watched state will not be affected):

Pull the Show - scan - empty trash - clean bundles.
Put half the season back - do the last half first - for grins…lol

Note:
I just added another new show - it took 10 minutes to negotiate the artwork and descriptions - a process that is almost always nearly instant. Give it some time.