Plex will not add all my new folders and shows series i long since deleted. Despite scanning library

Unless you’ve changed your VPN setup since this thread, remote access will not work with the VPN established. After dropping the VPN, you will need to disable, then re-enable remote access (Settings → Remote Access).

Regarding adding music, or other media, to the server, check the configuration in Settings → Library. The tasks to generate thumbnails, analyze audio tracks, etc are CPU intensive and may take a long time to complete. Consider scheduling the tasks to run “as a scheduled task.” They will then run during the maintenance window (Settings → Scheduled Tasks) and be less likely to slow down the system when you are trying to stream media.